Have you tried flashing the stock tune back on it to see if that changes anything?
Hopefully someone will chime in, but wouldn't it be pretty much a direct swap 5.3 unplugged and out and 6.0 dropped in and harnessed up, done deal? I'm thinking it would have ran on the 5.3 tune, correct me if I'm wrong....
Sounds like it is not comunitcating back and forth like you said, could simply be a bad connection or the tune?
Subscribed anyway as I'm looking at a 6.0 swap in the future!
By the way welcome to the site....
2002 Silverado 2500HD LB7 CCSB LT
EFI Live by Rob at ATP, Edge CTS Insight DSP 5 control, S&B CAI, PPE boost valve, Pro Fab AIH, AirDog II 165, PPE WIF sensor delete plug, 5" stainless exhaust, Cognito braces & HD tie rods, H2's 315/70 R17 BFG's
2004 Tahoe LT
2006 Silverado Z71 LS
1971 Chevy C10